Finding an accurate machine learning model is not the end of the project.
In this post you will discover how to save and load your machine learning model in Python using scikit-learn.
This allows you to save your model to file and load it later in order to make predictions.
Kick-start your project with my new book Machine Learning Mastery With Python, including step-by-step tutorials and the Python source code files for all examples.
Let’s get started.
Update Jan/2017: Updated to reflect changes to the scikit-learn API in version 0.18.
Update Mar/2018: Added alternate link to download the dataset as the original appears to have been taken down.
Update Oct/2019: Fixed typo in comment.
Update Feb/2020: Updated joblib API.
Save and Load Machine Learning Models in Python with scikit-learn Photo by Christine, some rights reserved.
Tutorial Overview
This tutorial is divided into 3 parts, they are:
Save Your Model with pickle
Save Your Model with joblib
Tips for Saving Your Model
Save Your Model with pickle
Pickle is the standard way of serializing objects in Python.
You can use the pickle operation to serialize your machine learning algorithms and save the serialized format to a file.
Later you can load this file to deserialize your model and use it to make new predictions.
The example below demonstrates how you can train a logistic regression model on the Pima Indians onset of diabetes dataset, save the model to file and load it to make predictions on the unseen test set (download from here).
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# Save Model Using Pickle
import pandas
from sklearn import model_selection
from sklearn.linear_model import LogisticRegression
Running the example saves the model to finalized_model.sav in your local working directory.
Note: Your results may vary given the stochastic nature of the algorithm or evaluation procedure, or differences in numerical precision. Consider running the example a few times and compare the average outcome.
Load the saved model and evaluating it provides an estimate of accuracy of the model on unseen data.
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This can be useful for some machine learning algorithms that require a lot of parameters or store the entire dataset (like K-Nearest Neighbors).
The example below demonstrates how you can train a logistic regression model on the Pima Indians onset of diabetes dataset, saves the model to file using joblib and load it to make predictions on the unseen test set.
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# Save Model Using joblib
import pandas
from sklearn import model_selection
from sklearn.linear_model import LogisticRegression
Running the example saves the model to file as finalized_model.sav and also creates one file for each NumPy array in the model (four additional files).
Note: Your results may vary given the stochastic nature of the algorithm or evaluation procedure, or differences in numerical precision. Consider running the example a few times and compare the average outcome.
After the model is loaded an estimate of the accuracy of the model on unseen data is reported.
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Tips for Saving Your Model
This section lists some important considerations when finalizing your machine learning models.
Python Version. Take note of the python version. You almost certainly require the same major (and maybe minor) version of Python used to serialize the model when you later load it and deserialize it.
Library Versions. The version of all major libraries used in your machine learning project almost certainly need to be the same when deserializing a saved model. This is not limited to the version of NumPy and the version of scikit-learn.
Manual Serialization. You might like to manually output the parameters of your learned model so that you can use them directly in scikit-learn or another platform in the future. Often the algorithms used by machine learning algorithms to make predictions are a lot simpler than those used to learn the parameters can may be easy to implement in custom code that you have control over.
Take note of the version so that you can re-create the environment if for some reason you cannot reload your model on another machine or another platform at a later time.
Summary
In this post you discovered how to persist your machine learning algorithms in Python with scikit-learn.
You learned two techniques that you can use:
The pickle API for serializing standard Python objects.
The joblib API for efficiently serializing Python objects with NumPy arrays.
Do you have any questions about saving and loading your model?
Ask your questions in the comments and I will do my best to answer them.
How can I predict in a case when there are difference between model’s and test data’s columns? I mean in case of one-hot encoding step that has been done before?
I trained my model in project 1 (with a custom module ‘heartdisease’), uploaded it so S3 bucket and now I am trying to load the joblib model in project 2. But I get ModuleNotFoundError ‘heartdisease’, which is the module I created in project 1 to preprocess the data.
What am I doing wrong here? Or is it not possible to dump all dependencies?
Perhaps you can find out why it is getting killed?
Perhaps you can try loading on another machine?
Perhaps you can try re-saving the model using a different library?
Do you know if it’s possible to save Matlab pre-trained model parsed from Matlab to Python inside Python so that I can later use it with another similar Python .py library to call that model to predict values without Matlab involved anymore? I was able to load the model using Matlab engine but I am not sure how to save this model in Python. Described methods resulted in Error such as “can’t pickle matlab.object objects”.
Hey, i trained the model for digit recognition but when i try to save the model i get the following error. Please help.
import pickle
# save the model to disk
filename = ‘digit_model.sav’
pickle.dump(model, open(filename, ‘wb’))
#saved_model=pickle.dumps(model)
ERROR-
—————————————————————————
TypeError Traceback (most recent call last)
in
3 # save the model to disk
4 filename = ‘digit_model.sav’
—-> 5 pickle.dump(model, open(filename, ‘wb’))
6 #saved_model=pickle.dumps(model)
I have two of your books and they are awesome. I took several machine learning courses before, however as you mentioned they are more geared towards theory than practicing. I devoured your Machine Learnign with Python book and 20x my skills compared to the courses I took.
I found this page by Googling a code snippet in chapter 17 in your book. The line:
Where we can get X_test, Y_test “sometime later”? It is “garbag collected”!
X_test, Y_test not pickled In your example you pickle classifier only but you keep refer to x and y. Real applications is not single flow I found work around and get Y from clf.classes_ object.
What is correct solution? Should we pickle decorator class with X and Y or use pickled classifier to pull Ys values? I didn’t find legal information from documentation on KNeighborclassifier(my example) as well; how to pull Y values from classifier.
I would not suggest saving the data. The idea is to show how to load the model and use it on new data – I use existing data just for demonstration purposes.
You can load new data from file in the future when you load your model and use that new data to make a prediction.
If you have the expected values also (y), you can compare the predictions to the expected values and see how well the model performed.
Hi Jason ,
I am just wondering if can we use Yaml or Json with sklearn library . I tried to do it many times but I could not reach to an answer . I tried to do it as your lesson of Kares , but for some reason is not working . hopefully you can help me if it is possible
Hi, my name is Normando Zubia and I have been reading a lot of your material for my school lessons.
I’m currently working on a model to predict user behavoir in a production environment. Due to several situations I can not save the model in a pickle file. Do you know any way to save the model in a json file?
I have been playing a little with sklearn classes and I noticed that if I save some parameters for example: n_values_, feature_indices_ and active_features_ in a OneHotEncoding model I can reproduce the results. Could this be done with a pipeline? Or do you think I need to save each model’s parameters to load each model?
PS: Sorry for my bad english and thanks for your attention.
If you are using a simple model, you could save the coefficients directly to file. You can then try and put them back in a new model later or implement the prediction part of the algorithm yourself (very easy for most methods).
I am new to machine learning. I am your big fan and read a lot of your blog and books. Thank you very much for teaching us machine learning.
I tried to pickle my model but fail. My model is using VGG16 and replace the top layer for my classification solution. I further narrowed down the problem and find that it is the VGG16 model failed to pickle. Please find my simplified code below and error log below:
It will be highly appreciated if you can give me some direction on how to fix this error.
Thank you very much
———————————————————-
# Save Model Using Pickle
from keras.applications.vgg16 import VGG16
import pickle
model = VGG16(weights=’imagenet’, include_top=False)
—————————————————-
/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7 /Users/samueltin/Projects/bitbucket/share-card-ml/pickle_test.py
Using TensorFlow backend.
Traceback (most recent call last):
File “/Users/samueltin/Projects/bitbucket/share-card-ml/pickle_test.py”, line 8, in
pickle.dump(model, open(filename, ‘wb’))
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 1376, in dump
Pickler(file, protocol).dump(obj)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 224, in dump
self.save(obj)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 331, in save
self.save_reduce(obj=obj, *rv)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 425, in save_reduce
save(state)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 655, in save_dict
self._batch_setitems(obj.iteritems())
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 669, in _batch_setitems
save(v)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 606, in save_list
self._batch_appends(iter(obj))
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 621, in _batch_appends
save(x)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 331, in save
self.save_reduce(obj=obj, *rv)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 425, in save_reduce
save(state)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 655, in save_dict
self._batch_setitems(obj.iteritems())
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 669, in _batch_setitems
save(v)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 606, in save_list
self._batch_appends(iter(obj))
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 621, in _batch_appends
save(x)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 331, in save
self.save_reduce(obj=obj, *rv)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 425, in save_reduce
save(state)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 655, in save_dict
self._batch_setitems(obj.iteritems())
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 669, in _batch_setitems
save(v)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 331, in save
self.save_reduce(obj=obj, *rv)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 425, in save_reduce
save(state)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 655, in save_dict
self._batch_setitems(obj.iteritems())
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 669, in _batch_setitems
save(v)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 331, in save
self.save_reduce(obj=obj, *rv)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 425, in save_reduce
save(state)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 655, in save_dict
self._batch_setitems(obj.iteritems())
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 669, in _batch_setitems
save(v)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 655, in save_dict
self._batch_setitems(obj.iteritems())
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 669, in _batch_setitems
save(v)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 606, in save_list
self._batch_appends(iter(obj))
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 621, in _batch_appends
save(x)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 331, in save
self.save_reduce(obj=obj, *rv)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 425, in save_reduce
save(state)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 655, in save_dict
self._batch_setitems(obj.iteritems())
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 669, in _batch_setitems
save(v)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 331, in save
self.save_reduce(obj=obj, *rv)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 425, in save_reduce
save(state)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 655, in save_dict
self._batch_setitems(obj.iteritems())
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 669, in _batch_setitems
save(v)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 331, in save
self.save_reduce(obj=obj, *rv)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 425, in save_reduce
save(state)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 655, in save_dict
self._batch_setitems(obj.iteritems())
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 669, in _batch_setitems
save(v)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 606, in save_list
self._batch_appends(iter(obj))
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 621, in _batch_appends
save(x)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 568, in save_tuple
save(element)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 655, in save_dict
self._batch_setitems(obj.iteritems())
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 669, in _batch_setitems
save(v)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 306, in save
rv = reduce(self.proto)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy_reg.py”, line 70, in _reduce_ex
raise TypeError, “can’t pickle %s objects” % base.__name__
TypeError: can’t pickle module objects
I have trained a model using liblinearutils. The model could not be saved using pickle as it gives error that ctype module with pointers cannot be pickled. How can I save my model?
How to use model file (“finalized_model.sav”) to test unknown data. Like, if the model is for tagger , how this model will tag the text file data? Is there any example?
Are there any examples showing how to save out the training of a model after say 100 epochs/iterations? It’s not immediately clear from looking at joblib or scikit learn.
This is esp. useful when dealing with large datasets and/or computers or clusters which may be unreliable (e.g., subject to system reboots, etc.)
Hello Jason and thank you very much, it’s been very helpful.
Do you know if it’s possible to load features transformation with the ML model?
I’m mostly thinking of categorical variables that we need to encode into numerical ones.
I’m using sklearn to do that, but I don’t know if we can (as for Spark), integrate this transformation with the ML model into the serialized file (Pickle or Joblib).
#Encode categorical variable into numerical ones
from sklearn.preprocessing import LabelEncoder
list_var = [‘country’, ‘city’]
encoder = LabelEncoder()
for i in list_var:
df[i] = encoder.fit_transform(df[i])
Then I fit the model on the training dataset…
And I need to save this transformation with the model. Do you know if that’s possible ?
Thank you!
Hi Jason,
Kindly accept my encomiums for the illustrative lecture that you have delivered on Machine Learning using Python.
**********************************************
# save the model to disk
filename = ‘finalized_model.sav’
joblib.dump(model, filename)
# sometime later…
# load the model from disk
loaded_model = joblib.load(filename)
result = loaded_model.score(X_test, Y_test)
print(result)
*******************************************************
After saving the model ‘finalized_model.sav’ , How can recall the saved model in the new session at later date?
The above code saves the model and later we can check the accuracy also
but what i have to do for making predicting the class of unknown data?
I mean which function have to be called ?
eg: 2,132,40,35,168,43.1,2.288,33
can you suggest how to get the class of above data through prediction ?
Can we use “pickling” to save an LSTM model and to load or used a hard-coded pre-fit model to generate forecasts based on data passed in to initialize the model?
When I tried to use it, it gave me following error:
PicklingError: Can’t pickle : attribute lookup module on builtins failed
Hi @Jason Brownlee thanks for such informative blog. Can you please guide me for a problem where i would like to retrain the .pkl model only with new dataset with new class keeping the previous learning intact. I had thought that model.fit(dataset,label) will do that but it forgets the previous learning. Please suggest me some techniques for it.
Thanks
Hi Jason, I believe @vikash is looking for a way to continuously train the model with new examples after the initial training stage. This is something I am searching for as well. I know it is possible to retrain a model in tensorflow with new examples but I am not sure if it’s possible with sklearn.
to expand the question some more: 1-you train a model with sklearn 2-save it with pickle or joblib
3-then you get your hands on some new examples that were not available at the time of initial training “step 1” 4-you load the previous model 5-and now you try to train the model again using the new data without losing the previous knowledge… is step 5 possible with sklearn?
I need your guidance on Updation of saved pickle files with new data coming in for training
I recall 3 methods, Online Learning which is train one every new observation coming in and in this case model would always be biased towards new features ,which i dont wana do
Second is, Whenever some set of n observations comes, embedd it with previous data and do retraining again from scratch, that i dont want to do as in live environment it will take lot of time
Third is Mini batch learning, i know some of algorithm like SGD and other use partial fit method and do same but I have other algorithms as week like random forest , decision tress, logistic regression. I wana ask can i update the previously trained pickle with new training ?
I am doing it in text classification, I read that possibly doing this, model update pickle will not take new features of new data ( made using tfidf or countvectorizer) and it would be of less help.
Also as domain is same, and If client(Project we are working for) is different , inspite of sharing old data with new client (new project), could i use old client trained model pickle and update it with training in new client data. Basically I am transferring learning
Gracias por compartir,
Existe alguna forma en la que pueda realizar predicciones con nuevos datos solo con el modelo guardado? llamando este modelo desde un archivo nuevo? lo he intentado con la instruccion final:
# load the model from disk
loaded_model = pickle.load(open(filename, ‘rb’))
result = loaded_model.score(X_test, Y_test)
print(result)
pero no lo he logrado
373/5000
Thanks for sharing,
Is there any way I can make predictions with new data only with the saved model? calling this model from a new file? I have tried with the final instruction:
# load the model from disk
loaded_model = pickle.load (open (filename, ‘rb’))
result = loaded_model.score (X_test, Y_test)
print (result)
Hi Jason, I learn a lot reading your python books and blogs. Thank you for everything.
I’m having an issue when I work on text data with loaded model in a different session. I fit and transform training data with countvectorizer and tfidf. Then I only transform the test data with the fitted instances as usual. But, when work on loaded pretrained model in a different session, I am having problem in feature extraction. I can’t just transform the test data as it asks for fitted instance which is not present in the current session. If I fit and transform on test data only, model prediction performance drastically decreases. I believe that is wrong way of doing machine learning. So, how can I do the feature extraction using countvectorizer, tfidf or other cases while working with previously trained model?
I’m using spark ML but I think it would be the same for scikit-learn as well.
I trained a random forest model and saved the same as a pickle file in my local desktop. I then copied that pickle file to my remote and tested the model with the same file and it is giving incorrect predictions. I am using python 3.6 in my local and python 3.4 in my remote, however the version of scikit-learn are same. Any ideas why this may be happening?
I have a LogisticRegression model for binary classification. I wish to find a similar data points in a trained model for a given test data points. So that I can show these are similar data points predicted with these same class.
Could you please suggest your thoughts for the same. I am using scikit learn logistic regression
If you pickle a model trained on a subset of features, is it possible to view these features after loading the pickled model in a different file? For example: original df has features a,b,c,d,e,f. You train the model on a,c,e. Is it possible to load the pickled model in a separate script and see the model was trained on a,c,e?
Thanks for explaining it so nicely. I am new to this and will be needing your guidance. I have data using which I have trained the model. Now I want this model to predict an untested data set. However, my requirement is an output which will have the data and corresponding prediction by the model. For example, record 1 – type a, record 2 – type a, record 3 – type c and so on. Could you please guide me on this?
Hi Jason!
I am new in python and I have the same problem. I already have trained the model to predict sex, but I need to predict an untested dataset (input a .csv file with the same features).
Please, what command should I have to use?
I am using chunks functionality in the read csv method in pandas and trying to build the model iteratively and save it. But it always saves the model that is being built in the last chunk and not the entire model. Can you help me with it
Hi Jason,
This is extremely helpful and saved me quite a bit of processing time.
I was training a Random Forest Classifier on a 250MB data which took 40 min to train everytime but results were accurate as required. The joblib method created a 4GB model file but the time was cut down to 7 Minutes to load. That was helpful but the results got inaccurate or atleast varied quite a bit from the original results. I use average of 2 Decision Tree and 1 Random Forest for the model. Decision Tree Models have kept there consistency loading vs training but RF hasn’t. Any ideas?
How do I generated new X_Test for prediction ? This new X_Test needs to make sure that the passed parameters are same in the model was trained with.
Background: I am basically saving the model and predicting with new values from time to time. How do we check whether the new values have all the parameters and correct data type.
Jason. Very good article. As asked by others, in my case I am using DecisionTreeClassifier with text feature to int transformation. Eventhough, you mentioned that transformation map can also be picked and read back, is there any example available? Will it be stored in the same file or it will be another file?
HI sir,
I would like to save predicted output as a CSV file. After doing ML variable I would like to save “y_predicted”. And I’m using python ide 3.5.x I have pandas,sklearn,tensorflow libraries
I would like to save predicted output as a CSV file. After doing ML variable I would like to save “y_predicted”. How I can save Naive Bayes, SVM, RF and DT Classification for final predictions for all samples saved as a .csv with three columns namely Sample, Actual value, Prediction
values
I have a list of regression coefficients from a paper. Is there a way to load these coefficients into the sklearn logistic regression function to try and reproduce their model?
Thanks!
Tommy
Hi,all
I am using scikit 0.19.1
I generated a training model using random forest and saved the model. These were done on ubuntu 16.01 x86_64.
I copied the model to a windows 10 64 bit machine and wanted to reuse the saved model. But unfortunately i get the following
Traceback (most recent call last):
File “C:\Users\PC\Documents\Vincent\nicholas\feverwizard.py.py”, line 19, in
rfmodel=joblib.load(modelfile)
File “C:\Python27\lib\site-packages\sklearn\externals\joblib\numpy_pickle.py”, line 578, in load
obj = _unpickle(fobj, filename, mmap_mode)
File “C:\Python27\lib\site-packages\sklearn\externals\joblib\numpy_pickle.py”, line 508, in _unpickle
obj = unpickler.load()
File “C:\Python27\lib\pickle.py”, line 864, in load
dispatchkey
File “C:\Python27\lib\pickle.py”, line 1139, in load_reduce
value = func(*args)
File “sklearn\tree_tree.pyx”, line 601, in sklearn.tree._tree.Tree.cinit
ValueError: Buffer dtype mismatch, expected ‘SIZE_t’ but got ‘long long’
What could be happening? Is it because of a switch from ubuntu to windows? However i am able to reuse the model in my ubuntu.
I suspect it is possible. It’s all just code at the end of the day. You might need some kind of Python-FORTRAN bridge software. I have not done this, sorry.
Hi Sir ,
I wanted to know if its possible to combine the scikit preloaded datasets with some new datasets to get more training data to get further higher accuracy or firstly run on the scikit loaded dataset and then save model using pickle an run it on another dataset .
Which method will be correct ?
Please help .
Hi jason,
My name is Akash Joshi.I am trying to train my scikit svm model with 101000 images but I run out of memory.Is there a way where I can train the svm model in small batches?Can we use pickle?
I created a machine learning (GBM) model to predict house prices and a Django application to usability. This model has more than 1000 n_estimators and it takes more than 1 minutes to load before getting the prediction in every request.
I would like to load joblib dump file just once and store the model in memory, avoiding loading the model in every get requests.
okay what if i had 2 datasets for Example a Loan datasets
the first dataset has a Loan_Status attribute
and the second one does not have a Loan_Status attribute
if i trained the model on the first dataset and i want to predict the Loan_Status for the second dataset, how to do that? please make it simple for me i’m beginner
Hey Jason, I am working on a model to classify text files. I am using the CountVectorizer, TfidfTransformer and SGDClassifier in the same sequence on a set of data files. I am saving the SGDClassifier object via the joblib.dump method you have mentioned in this article.
Do I also need to save the vectorizer and transformer objects/models ? Since when i take a new file for classification I will need to go through these steps again.
Yes Jason i am using gensim word2vec to convert text into feature vectors and then performing classification task.after saving model and reloading in another session its giving different results.
I am training a neural network using MLPRegressor, trying to predict pressure drop in different geometries of heat exchangers. I think I have gotten the network to train well with low MRE, but I can’t figure out how to use the network. When I tried to load using pickle and call again, I am getting an error when using “score”. I am new to python so not sure how to go about bringing in new data for the network to predict or how to generalize doing so.
Thanks for the recommendation. Is there no easy way to save a model and call from it to use in scikit learn? I have been getting good results with the model I have made on there, I just don’t know how to get it to the point where I can actually use the network (i.e. put in a geometry and get it’s predictions).
If using Keras API to save/load is the best option, how do I go about doing that?
Thank you for your nice tutorial! Does pickle.dump(model, open(filename, ‘wb’)) only save the neural network model or it also save the parameters and weights of the model?
Does the back propagation and training is done again when we use pickle.load ?
What I would like to do is that I aim to save the whole model and weights and parameters during training and use the same trained model for every testing data I have. I would be so thankful if you could assist me in this way.
I am trying to save my model using joblib.dump(model, ‘model.pkl’) and load it back up in another .py file model = joblib.load(‘model.pkl’) but then the accuracy dropped and each time I run it the accuracy differs a lot. I coefficient and the intercept and the same for both models. Any ideas why this might happen. Thanks in advance.
I want to develop to train my model and save in pickle file. From the next time onwards, when i want to train the model, it should save in previously created pickle file in append mode that reduces the time of training the model. I am using LogisticRegression model.
This article shows how to save a model that is built from scratch. But I am looking to train the model by including additional data so as to achieve high prediction performance and accuracy for unseen data. Is there any leads or approach you can think?
I have some requirement to integrate python code with Java.
I have a ML model which is trained as saved as pickle file, Randomforestclassifier.pkl. I want to load this one time using java and then execute my “prediction” part code which is written python. So my workflow is like:
1. Read Randomforestclassifier.pkl file (one time)
2. Send this model as input to function defined in “python_file.py” which is executed from java for each request
3. python_file.py has prediction code and predictions returned should be captured by java code
Please provide suggestions for this workflow requirement I have used processbuilder in java to execute python_file.py and everything works fine except for model loading as one time activity.
Can you help me with some client server python programming without using rest APIs for one time model loading?
I have trained my model and evaluated the accuracy using cross-validation score.
After evaluating the model, should I train my model with the whole data set and then save the new trained model for new future data. (assuming the new model performs with good accuracy around mean accuracy from cross-validation)
Thank you for your tutorials and instant replies to questions. 🙂
I have a very basic question, let’s say I have one model trained on 2017-2018, and then after 6 months I feel to retrain it on new data. What does retraining actually means here, do I need to have target for my new data and needs to trained from scratch for new time period, I obviously don’t have the target and then how model will learn from new data.
I am new to this.. So pardon, if I am asking something incorrect…
I have two stages. Build model and predict.
For Build model:
I am using vectorizer.fit_transform(data) and building the logistic model. My data is a bunch of comments and the target is a set of categories. In order for me to use that model for predicting categories for new comments, I am using the vector created earlier during building of model to predict
So, when I do the save model joblib.dump(log_model, “model.sav”)
Foe Predict:
When I try to re-run the model (saved) at a later point of time, I don’t have the original vectorizer anymore with the original data set
log_model = joblib.load(“model.sav”)
inputfeatures_nd = vectorizer.transform(newComment);
pred = log_model.predict(inputfeatures_nd)
I get this error – sklearn.exceptions.NotFittedError: CountVectorizer – Vocabulary wasn’t fitted.
What do you suggest I should do ? Should I be serializing the vector also and storing ?
Thanks Jason for your intersting subjects.
I have this error when saving a VGG16 model after training and testing on my own dataset (can’t pickle _thread.RLock objects) when applying the two methods. I also read somewhere that Keras models are not Pickable. So, do you think that those methods are applicable in my case?
Hi Jason, I have a .sav file where my random forest model has been trained. I have to get back the whole python script for training the model from that .sav file. Is it possible??
Hi Jason, I have trained a model of Naved Baise for sentiment analysis through a trained dataset file of .csv and now I want to use that model for check sentiments of the sentences which are also saved in another .csv file, how could I use?
I have a Class Layer defined to do some functions in Keras. I trained the model and pickled it. Now when I try to unpickle it, I see an error saying- unknown layer Layer.
How should be pickle the model in this case?
When in this article you say:
“You might manually output the parameters of your learned model so that you can use them directly in scikit-learn”,
I see that we can manually get the tuned hyperparameters, or for example in svm, we can get weight coefficients (coef_),
BUT, is it possible to get svm hyperplane parameters, w and b (y=wx+b) for future predictions?
I believe that pickle saves and load the learned model including w and b but is there any way we can manually output w and b and see what they are in scikit learn?
Many thanks
I believe they will be accessible as attributes within the SVM class.
You might need to take a closer look at the API or even the source code to dig out the coefficients and how they are specifically used by sklearn to make a prediction.
Thank god for open source though, it’s all there for us!
Do I have to save in the pickel file the whole pipeline or just the classifier ?
When I save the whole pipeline, the size of the pickel file increases with the amount of training data, but I thouht it shouldn’t impact the model size (only the parameters of the model should impact the size of this one)
Hi, big fan of your tutorials.
What are you thought about ONNX (https://onnx.ai/)
Do you think about making a tutorial to explain how it works and how to use it ?
I wanted to ask you, does this procedure work for saving Grid – Searched models as well? Because when I try to save the grid-search.best_estimator_ it does not give me the results I expect it to (ie the same score on the sample data I use) and the solutions I have found don’t work either. Any tips on how to do that?
Could you please point me to a source which shows how this is done in code? I ‘ve tried (via my search) the following and it does not give me the expected results:
I grid search an example model, fit it, calculate an example metric for comparisons, and then attempt to save the parameters and use them to instantiate the best estimator later, to avoid having to redo the exhaustive search. It does not give me the same score though. What is wrong? I ‘ve tried just saving the best_estimator_ but it gives me the same wrong result.
firstly, thank you for sharing such amazing information always.
this is my code:
import time
import numpy as np
import pandas as pd
from nltk import word_tokenize
from nltk import pos_tag
from nltk.corpus import stopwords
from nltk.stem import WordNetLemmatizer
from sklearn.preprocessing import LabelEncoder
from collections import defaultdict
from nltk.corpus import wordnet as wn
from sklearn.feature_extraction.text import TfidfVectorizer
from sklearn import model_selection, svm
from sklearn.metrics import accuracy_score
from sklearn.ensemble import RandomForestClassifier
import pickle
start_time = time.time()
np.random.seed(500)
#getting only the required columns and rows
dataset = pd.read_csv(“records.csv”, sep=”\t”)
dataset_new = dataset.iloc[:, [4, 5, 6, 8, 9]]
dataset_time = time.time()
print (“Time taken to create dataset : “, dataset_time – start_time)
df_less[‘description’] = [entry.lower() for entry in df_less[‘description’]]
df_less[‘description’] = [word_tokenize(entry) for entry in df_less[‘description’]]
df_less = df_less.reset_index(drop=True)
tokenize_time = time.time()
print (“Time taken to tokenize dataset : “, tokenize_time – dataset_time)
for index, entry in enumerate(df_less[‘description’]):
Final_words = []
for word in entry:
if word.isalpha():
Final_words.append(word)
df_less.loc[index, ‘desc_final’] = str(Final_words)
df_others = df_less[df_less[‘desc_final’] == ‘[]’]
df_less_final = pd.DataFrame()
df_less_final = df_less[df_less[‘desc_final’] != ‘[]’]
df_less_final = df_less_final.reset_index(drop=True)
data_cleanup_time = time.time()
print (“Time taken for data cleanup”, data_cleanup_time – tokenize_time)
sir this a model that i have prepared now i want to dump it using pickle but i am not able to understand how can i do this…since everytime i want to predict new records i want to preprocess my one of my rows as i am doing above, and also used vectorizer..and then predict the results..can you please help me with the solution.
thank you
Thank you so much for all your effort, but I am a beginner in ML and Python and I have a basic conceptual question:
I used a CSV file to train, test and fit my random forest model then I saved the model in a pickle file. Now my partner wants to use the model for prediction on new unseen data(entered by user) so my question is should I send her only the model I saved in a pickle file or also the data I used to train and fit the model? I mean would the pkl model work even if the CSV file containing the data used to fit the model is not in the same folder or host? I hope my question is clear. Thank you again very much!!
Sir, model saving and re-using is okay but what about the pre-processing steps that someone would have used like LabelEncoder or StandardScalar function to transform the features.
We would need to apply the same transformation on the unseen dataset so how do we proceed there? How can we save these pre-processing steps.
I’m a big fan of your blog. The thing is, while it is useful to save a model, often the model is already part of a pipeline. I’ve had success using the joblib method to store a pre-trained pipeline and then load it into the same environment that I’ve built it in and get predictions. However, when I say, save a pipeline in AWS and then load it locally, I get errors.
Is there a best practice when it comes to saving pipelines vs naked models?
Perhaps a tutorial where you train a pipeline using RandomizedSearchCV and then save it would be useful?
Hi Jason, thanks for your time, and really interesting tutorials !
I trained and saved a random forest model, and i analysed the classification performance with different thresholds.
Now i want to apply this saved random forest with a new data set, to get predictions, but using a different threshold than 50%. But it seems i can’t get the outcome of rf.predict_proba(x) function, i get a “NotFittedError”… it says that my rf model is not fitted yet… i am lost now… Is there sthg wrong in my reasoning ? Is there an other way to get the classification probabilities ?Thank you.
Hi Jason..there is a error in line number 13 of the code…instead of “# Fit the model on 33%” it should be “# Fit the model on 67%” as we are fitting the model to the training set which is 67%…
Hi Jason,
I am working on APS failure scania trucks project…
After using joblib library for saving & loading the file, i got the following:
# Save model for later use
modelName = ‘finalModel_BinaryClass.sav’
joblib.dump(finalModel, modelName)
Output: [‘finalModel_BinaryClass.sav’]
# load the model from disk
loaded_model = joblib.load(modelName)
result = loaded_model.score(X_validation, Y_validation)
print(result)
Output: 0.9894375
My query is i am unable to find where the final model is saved… Could you please help me?
Hi,
I have also used Standardization on the training and testing dataset. I have deployed the model file.
How can I do standardization when calling the model through API?
My model was created with exel file..Anyway model is ready. Now I would like to use model online. I mean ınputs are will come from sql database and same time I would like to see result from model. (Predıct value)
Ok but how ? I am asking because I am not sure how to do?
If you can explain me a little bit, or you can Show me example (example link) I would be happy.!
Can these model files pickles be opened or created in anything else?
I know orange uses some of scikit learn and ran both.
But I never made a scikit learn pickle and opened it in orange or created a orange save model wiget file is a pickle file.
I would like to use this to open a model in keras tensorflow and be able to run the apps to make it tensorflow light compatible and then run it in a microcontroller. Like rasbery pi 4 or maby the requirements is it has to run python 3 there are some arm processors that do that.
Hi Jason,
How can i unpickle the learnable parameters(weights and biases) after Fitting the model. I am finding hard to get the learnable parameters from the pickle file. Is there any process??
Thanks
Thank you for this tutorial! You always explain concepts so easy!
I have a question.
If I had to use a scaler during training like
…
X_scaled = scaler.fit_transform(X)
…
Later I fitted the model and saved it with pickle.dump(clf, open(filename, ‘wb’))
Then I supone that I have to scale test data for prediction using the same scaler fitted during training like scaler.transform(x_test)
My question is: besides saving the model, do we have to save objects like the scaler in this example to provide consistency? Can we use pickle or joblib ?
Hi Jason,
I am using Django to deploy my model to the web….. I am getting a strange behaviour with the labelencoder of my model…..Can you please help me to go through this by posting an article:
How to deploy a sklearn model in django..
please
Best Regards,
Adarsh
Thank you. This post shows how to save a model once after being trained on the entire dataset in one go. However, most of the real-world data sets are huge and can’t be trained in one go. How can I save a model after training it on each chunk of data?
df = pd.read_csv(“an.csv”, chunksize=6953)
for chunk in df:
text = chunk[‘body’]
label = chunk[‘user_id’]
Most sklearn models store the parameters used to configure their instance as a property (I think…). Check the contents of the loaded object, or check the sklearn api.
Hi,
is possible to convert a sklearn model in tensorflowlite model (.tflite)?
i need to run an SVM model in android and this seems to me the best solution (if it is possible)
are there other solution?
I tried this out but noticed that every time I serialize a model, the resulting file has a different checksum. Any ideas how to preserve the integrity of the model file if data and algorithms do not change?
Here is my test code:
import numpy as np
from sklearn import linear_model
import joblib
import hashlib
# set a fixed seed …
np.random.seed(1979)
# internal md5sum function
def md5(fname):
hash_md5 = hashlib.md5()
with open(fname, “rb”) as f:
for chunk in iter(lambda: f.read(4096), b””):
hash_md5.update(chunk)
return hash_md5.hexdigest()
# dummy regression data
X = [[0., 0., 0.,1.], [1.,0.,0.,0.], [2.,2.,0.,1.], [2.,5.,1.,0.]]
Y = [[0.1, -0.2], [0.9, 1.1], [6.2, 5.9], [11.9, 12.3]]
# create model
reg = linear_model.LinearRegression()
# save model to disk to make it persistent
with open(“reg.joblib”, “w”):
joblib.dump(reg, “reg.joblib”)
# load persistant model from disk
with open(“reg.joblib”, “r”):
model = joblib.load(“reg.joblib”)
xgb_clf.fit(X1, y1)
#predict train set
print(‘train set’)
y2_pred = xgb_clf.predict(X1)
# print the accuracy
print(‘ xtra Gradient boosting Classifier model accuracy score for train set : {0:0.4f}’. format(accuracy_score(y1, y2_pred)))
I have designed model using XGBoostingClassifier()
then,
#pip install pickle-mixin
import pickle
# saving the model to the local file system
filename = ‘finalized_model.pickle’
pickle.dump(xgb_clf, open(filename, ‘wb’))
when , I m passing train data set to check my pickled model is working or not ?
# prediction using the saved model.
loaded_model = pickle.load(open(filename, ‘rb’))
prediction=loaded_model.predict(X1) #X1 is train at set
print(prediction)
O/P:-[0 0 0 … 1 1 1]
its giving fine as output
but when , I m giving single list of input then its giving error like
# prediction using the saved model.
loaded_model = pickle.load(open(filename, ‘rb’))
prediction=loaded_model.predict([[62.0,9.0,16.0,39.0,35.0,205.0]])
print(prediction)
TypeError: Input data can not be a list.
when I m removing [] bracket then its again giving like
# prediction using the saved model.
loaded_model = pickle.load(open(filename, ‘rb’))
prediction=loaded_model.predict([62.0,9.0,16.0,39.0,35.0,205.0])
print(prediction)
TypeError: Input data can not be a list.
when I m removing both [[]] from input
# prediction using the saved model.
loaded_model = pickle.load(open(filename, ‘rb’))
prediction=loaded_model.predict(62.0,9.0,16.0,39.0,35.0,205.0)
print(prediction)
TypeError: predict() takes from 2 to 6 positional arguments but 7 were given
I know you’re not a fan of windows but Im’ stick with it. Just to say skikit-learn is not available on windows but you already tutored a fine example of coding and comparing different algorithms, so I can live without it.
if the saved_model is in the form frozen_inference_graph.pb or graph.pbtxt, can we get the accuracy value? how is the coding? Please help me. thank you
Hi Jason, thanks for your article. Short question though – you mentioned:
“Manual Serialization. You might like to manually output the parameters of your learned model so that you can use them directly in scikit-learn or another platform in the future.”
Can you give me a head-start of how to load a model if I only have the intercept and slopes? should be possible, no? it is a multiple features linear regression model.
thanks.
Hi Jason, I’m currently doing my project on Machine Learning and currently have a lot of datasets (CSV files) with me. If I train one machine learning model with one dataset and save it either using pickle or joblib, do I need to do it for the rest of the dataset? (So I will have more saved model) or I could just load the saved model onto another dataset and let the program handle the prediction?
I hope my question is clear and thank you for your help.
p.s. Your website is really helpful for both beginners and experts in ML.
I am training a XGBoost model but when I save it and when I applied the model to the same data after loading it, the results are very different (like almost oposite to what we obtain when we predict the data with the model before saving it). Is the same exact data.
For example, the confusion matrix with the model before saving it can be something like:
0/1
0 80/20
1 20/80
And the confusion matrix with the same data but the loaded model is:
0/1
0 20/80
1 20/80
I saved the model with the different ways you teah in this post, and the situation persists. What can be the problem?
Thank you so much for this educative post.
You’re welcome Kayode.
How can I predict in a case when there are difference between model’s and test data’s columns? I mean in case of one-hot encoding step that has been done before?
If a label has not been seen before, you can ignore it, e.g. encode it as all zeros.
Hi sir I am trying to unpickle my model in Django project but got value error:buffer type mismatch expected size_t but got long long
Sorry, I have not seen that error. Perhaps try posting/searching on stackoverflow.
How can I load a joblib model in another project?
I trained my model in project 1 (with a custom module ‘heartdisease’), uploaded it so S3 bucket and now I am trying to load the joblib model in project 2. But I get ModuleNotFoundError ‘heartdisease’, which is the module I created in project 1 to preprocess the data.
What am I doing wrong here? Or is it not possible to dump all dependencies?
Perhaps you will require the same custom code/module in the current context in order to load your saved object.
Hi,
Loading the huge Model back using joblib.load() is getting killed.
I am looking solution for my issue. Thanks.
Sorry to hear that.
Perhaps you can find out why it is getting killed?
Perhaps you can try loading on another machine?
Perhaps you can try re-saving the model using a different library?
Do you know if it’s possible to save Matlab pre-trained model parsed from Matlab to Python inside Python so that I can later use it with another similar Python .py library to call that model to predict values without Matlab involved anymore? I was able to load the model using Matlab engine but I am not sure how to save this model in Python. Described methods resulted in Error such as “can’t pickle matlab.object objects”.
Sorry I do not.
Hey, i trained the model for digit recognition but when i try to save the model i get the following error. Please help.
import pickle
# save the model to disk
filename = ‘digit_model.sav’
pickle.dump(model, open(filename, ‘wb’))
#saved_model=pickle.dumps(model)
ERROR-
—————————————————————————
TypeError Traceback (most recent call last)
in
3 # save the model to disk
4 filename = ‘digit_model.sav’
—-> 5 pickle.dump(model, open(filename, ‘wb’))
6 #saved_model=pickle.dumps(model)
TypeError: can’t pickle _thread._local objects
Sorry to hear that, perhaps try posting your code and error on stackoverflow?
Is it a must the finalised model is saved with a “.sav” file extension. Can we save it as a python file(.py)
No, it is binary, not Python code.
if your using pickle you should give .pickle extension that should work.
A .pkl extension is just fine.
Hi Jason,
I have two of your books and they are awesome. I took several machine learning courses before, however as you mentioned they are more geared towards theory than practicing. I devoured your Machine Learnign with Python book and 20x my skills compared to the courses I took.
I found this page by Googling a code snippet in chapter 17 in your book. The line:
loaded_model = pickle.load(open(filename, ‘rb’))
throws the error:
runfile(‘C:/Users/Tony/Documents/MassData_Regression_Pickle.py’, wdir=’C:/Users/Tony/Documents’)
File “C:/Users/Tony/Documents/MassData_Regression_Pickle.py”, line 55
loaded_model = pickle.load(open(filename, ‘rb’))
^
SyntaxError: invalid syntax
Thanks TonyD.
I wonder if there is a copy-paste error, like an extra space or something?
Does the code example (.py file) provided with the book for that chapter work for you?
As Jason already said, this is a copy paste problem. In your line specifically, the quotes are the problem.
loaded_model = pickle.load(open(filename, ‘rb’))It should be
loaded_model = pickle.load(open(filename, 'rb'))Try to understand the difference :).
Thanks.
This might help:
https://machinelearningmastery.com/faq/single-faq/how-do-i-copy-code-from-a-tutorial
Hey TonyD
Can you please share the books with me if you don’t mind.
I’m very eager to learn machine learning but i can’t afford to buy the books. If you could help me out with the books it would be great.
You can discover my best free tutorials here:
https://machinelearningmastery.com/start-here/
Hello, Jason
Where we can get X_test, Y_test “sometime later”? It is “garbag collected”!
X_test, Y_test not pickled In your example you pickle classifier only but you keep refer to x and y. Real applications is not single flow I found work around and get Y from clf.classes_ object.
What is correct solution? Should we pickle decorator class with X and Y or use pickled classifier to pull Ys values? I didn’t find legal information from documentation on KNeighborclassifier(my example) as well; how to pull Y values from classifier.
Can you advise?
Hi Konstantin,
I would not suggest saving the data. The idea is to show how to load the model and use it on new data – I use existing data just for demonstration purposes.
You can load new data from file in the future when you load your model and use that new data to make a prediction.
If you have the expected values also (y), you can compare the predictions to the expected values and see how well the model performed.
I’m newer Pythoner, your code works perfect! But where is the saved file? I used windows 10.
Thanks Guangping.
The save file is in your current working directory, when running from the commandline.
If you’re using a notebook or IDE, I don’t know where the file is placed.
Hi Jason ,
I am just wondering if can we use Yaml or Json with sklearn library . I tried to do it many times but I could not reach to an answer . I tried to do it as your lesson of Kares , but for some reason is not working . hopefully you can help me if it is possible
Hi Mohammed, I believe the serialization of models to yaml and json is specific to the Keras library.
sklearn serialization is focused on binary files like pickle.
Hi, my name is Normando Zubia and I have been reading a lot of your material for my school lessons.
I’m currently working on a model to predict user behavoir in a production environment. Due to several situations I can not save the model in a pickle file. Do you know any way to save the model in a json file?
I have been playing a little with sklearn classes and I noticed that if I save some parameters for example: n_values_, feature_indices_ and active_features_ in a OneHotEncoding model I can reproduce the results. Could this be done with a pipeline? Or do you think I need to save each model’s parameters to load each model?
PS: Sorry for my bad english and thanks for your attention.
Hi Normando,
If you are using a simple model, you could save the coefficients directly to file. You can then try and put them back in a new model later or implement the prediction part of the algorithm yourself (very easy for most methods).
Let me know how you go.
Hello Jason,
I am new to machine learning. I am your big fan and read a lot of your blog and books. Thank you very much for teaching us machine learning.
I tried to pickle my model but fail. My model is using VGG16 and replace the top layer for my classification solution. I further narrowed down the problem and find that it is the VGG16 model failed to pickle. Please find my simplified code below and error log below:
It will be highly appreciated if you can give me some direction on how to fix this error.
Thank you very much
———————————————————-
# Save Model Using Pickle
from keras.applications.vgg16 import VGG16
import pickle
model = VGG16(weights=’imagenet’, include_top=False)
filename = ‘finalized_model.sav’
pickle.dump(model, open(filename, ‘wb’))
—————————————————-
/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7 /Users/samueltin/Projects/bitbucket/share-card-ml/pickle_test.py
Using TensorFlow backend.
Traceback (most recent call last):
File “/Users/samueltin/Projects/bitbucket/share-card-ml/pickle_test.py”, line 8, in
pickle.dump(model, open(filename, ‘wb’))
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 1376, in dump
Pickler(file, protocol).dump(obj)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 224, in dump
self.save(obj)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 331, in save
self.save_reduce(obj=obj, *rv)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 425, in save_reduce
save(state)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 655, in save_dict
self._batch_setitems(obj.iteritems())
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 669, in _batch_setitems
save(v)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 606, in save_list
self._batch_appends(iter(obj))
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 621, in _batch_appends
save(x)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 331, in save
self.save_reduce(obj=obj, *rv)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 425, in save_reduce
save(state)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 655, in save_dict
self._batch_setitems(obj.iteritems())
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 669, in _batch_setitems
save(v)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 606, in save_list
self._batch_appends(iter(obj))
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 621, in _batch_appends
save(x)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 331, in save
self.save_reduce(obj=obj, *rv)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 425, in save_reduce
save(state)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 655, in save_dict
self._batch_setitems(obj.iteritems())
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 669, in _batch_setitems
save(v)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 331, in save
self.save_reduce(obj=obj, *rv)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 425, in save_reduce
save(state)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 655, in save_dict
self._batch_setitems(obj.iteritems())
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 669, in _batch_setitems
save(v)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 331, in save
self.save_reduce(obj=obj, *rv)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 425, in save_reduce
save(state)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 655, in save_dict
self._batch_setitems(obj.iteritems())
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 669, in _batch_setitems
save(v)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 655, in save_dict
self._batch_setitems(obj.iteritems())
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 669, in _batch_setitems
save(v)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 606, in save_list
self._batch_appends(iter(obj))
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 621, in _batch_appends
save(x)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 331, in save
self.save_reduce(obj=obj, *rv)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 425, in save_reduce
save(state)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 655, in save_dict
self._batch_setitems(obj.iteritems())
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 669, in _batch_setitems
save(v)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 331, in save
self.save_reduce(obj=obj, *rv)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 425, in save_reduce
save(state)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 655, in save_dict
self._batch_setitems(obj.iteritems())
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 669, in _batch_setitems
save(v)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 331, in save
self.save_reduce(obj=obj, *rv)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 425, in save_reduce
save(state)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 655, in save_dict
self._batch_setitems(obj.iteritems())
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 669, in _batch_setitems
save(v)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 606, in save_list
self._batch_appends(iter(obj))
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 621, in _batch_appends
save(x)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 568, in save_tuple
save(element)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 286, in save
f(self, obj) # Call unbound method with explicit self
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 655, in save_dict
self._batch_setitems(obj.iteritems())
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 669, in _batch_setitems
save(v)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/pickle.py”, line 306, in save
rv = reduce(self.proto)
File “/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/copy_reg.py”, line 70, in _reduce_ex
raise TypeError, “can’t pickle %s objects” % base.__name__
TypeError: can’t pickle module objects
Process finished with exit code 1
Sorry Samuel, I have not tried to save a pre-trained model before. I don’t have good advice for you.
Let me know how you go.
Is there a more efficient method in machine learning than joblib.load(), storing the model directly in memory and using it again?
Sure, you can make an in-memory copy. I think sklearn has a clone() function that you can use.
I have trained a model using liblinearutils. The model could not be saved using pickle as it gives error that ctype module with pointers cannot be pickled. How can I save my model?
Sorry Amy, I don’t have any specific examples to help.
Perhaps you can save the coefficients of your model to file?
Thanks a lot, very useful
You’re welcome!
My saved modells are 500MB+ Big….is that normal?
Ouch, that does sound big.
If your model is large (lots of layers and neurons) then this may make sense.
How to use model file (“finalized_model.sav”) to test unknown data. Like, if the model is for tagger , how this model will tag the text file data? Is there any example?
You can load the saved model and start making predictions (e.g. yhat = model.predict(X)).
See this post on finalizing models:
http://machinelearningmastery.com/train-final-machine-learning-model/
When i try to run this code i have get this error can you help me
{AttributeError: ‘int’ object has no attribute ‘predict’}
import numpy as np
import pretrainedmodels
import torch
import torch.nn as nn
import pickle
import base64
import cv2
from PIL import Image
import io
with open(“picture.png”, “rb”) as file:
data = base64.b64encode(file.read()).decode()
print(type(data))
#img deconversion from base64 to np array
decoded_data = base64.b64decode(data)
np_data = np.fromstring(decoded_data,np.uint8)
img = cv2.imdecode(np_data,cv2.IMREAD_UNCHANGED)
loaded_model = pickle.load(open(“densenet.pkl”, “rb”))
label = loaded_model.predict(img)
print (label)
Sorry to hear that. This is a common question that I answer here:
https://machinelearningmastery.com/faq/single-faq/can-you-read-review-or-debug-my-code
Dear Sir, please advice on how to extract weights from pickle dump? Thank you
I would suggest extracting coefficients from your model directly and saving them in your preferred format.
Hi I love your website; it’s very useful!
Are there any examples showing how to save out the training of a model after say 100 epochs/iterations? It’s not immediately clear from looking at joblib or scikit learn.
This is esp. useful when dealing with large datasets and/or computers or clusters which may be unreliable (e.g., subject to system reboots, etc.)
I’m not sure how to do this with sklearn. You may need to write something custom. Consider posting to stackoverflow.
Hey!
Is it possible to open my saved model and make a prediction on cloud server where is no sklearn installed?
no.
You could save the coefficients from within the model instead and write your own custom prediction code.
Hello Jason and thank you very much, it’s been very helpful.
Do you know if it’s possible to load features transformation with the ML model?
I’m mostly thinking of categorical variables that we need to encode into numerical ones.
I’m using sklearn to do that, but I don’t know if we can (as for Spark), integrate this transformation with the ML model into the serialized file (Pickle or Joblib).
#Encode categorical variable into numerical ones
from sklearn.preprocessing import LabelEncoder
list_var = [‘country’, ‘city’]
encoder = LabelEncoder()
for i in list_var:
df[i] = encoder.fit_transform(df[i])
Then I fit the model on the training dataset…
And I need to save this transformation with the model. Do you know if that’s possible ?
Thank you!
I’m not sure I follow sorry.
You can transform your data for your model, and you can apply this same transform in the future when you load your model.
You can save the transform objects using pickle. Is that what you mean?
Hi Jason,
Kindly accept my encomiums for the illustrative lecture that you have delivered on Machine Learning using Python.
**********************************************
# save the model to disk
filename = ‘finalized_model.sav’
joblib.dump(model, filename)
# sometime later…
# load the model from disk
loaded_model = joblib.load(filename)
result = loaded_model.score(X_test, Y_test)
print(result)
*******************************************************
After saving the model ‘finalized_model.sav’ , How can recall the saved model in the new session at later date?
I would appreciate if you can advice on this
The code after “sometime later” would be in a new session.
Hello sir,
The above code saves the model and later we can check the accuracy also
but what i have to do for making predicting the class of unknown data?
I mean which function have to be called ?
eg: 2,132,40,35,168,43.1,2.288,33
can you suggest how to get the class of above data through prediction ?
thank you
Pass in input data to the predict function and use the result.
Can we use “pickling” to save an LSTM model and to load or used a hard-coded pre-fit model to generate forecasts based on data passed in to initialize the model?
When I tried to use it, it gave me following error:
PicklingError: Can’t pickle : attribute lookup module on builtins failed
No.
See this tutorial on how to save Keras models:
http://machinelearningmastery.com/save-load-keras-deep-learning-models/
Great. It worked.
You are awesome Jason. Appreciated.
Glad to hear it.
tbh this is best of the sites on web. Great!
I love the email subscriptions of yours as a beginner they are quite helpful to me .
Thanks, I’m glad to hear that.
Hi @Jason Brownlee thanks for such informative blog. Can you please guide me for a problem where i would like to retrain the .pkl model only with new dataset with new class keeping the previous learning intact. I had thought that model.fit(dataset,label) will do that but it forgets the previous learning. Please suggest me some techniques for it.
Thanks
Sorry, I don’t follow. Can you please restate your question?
Hi Jason, I believe @vikash is looking for a way to continuously train the model with new examples after the initial training stage. This is something I am searching for as well. I know it is possible to retrain a model in tensorflow with new examples but I am not sure if it’s possible with sklearn.
to expand the question some more: 1-you train a model with sklearn 2-save it with pickle or joblib
3-then you get your hands on some new examples that were not available at the time of initial training “step 1” 4-you load the previous model 5-and now you try to train the model again using the new data without losing the previous knowledge… is step 5 possible with sklearn?
I have not updated a model in sklearn, but I would expect you can.
Here is an example of updating a model in Keras which may help in general principle:
https://machinelearningmastery.com/update-lstm-networks-training-time-series-forecasting/
Hi Json,
I need your guidance on Updation of saved pickle files with new data coming in for training
I recall 3 methods, Online Learning which is train one every new observation coming in and in this case model would always be biased towards new features ,which i dont wana do
Second is, Whenever some set of n observations comes, embedd it with previous data and do retraining again from scratch, that i dont want to do as in live environment it will take lot of time
Third is Mini batch learning, i know some of algorithm like SGD and other use partial fit method and do same but I have other algorithms as week like random forest , decision tress, logistic regression. I wana ask can i update the previously trained pickle with new training ?
I am doing it in text classification, I read that possibly doing this, model update pickle will not take new features of new data ( made using tfidf or countvectorizer) and it would be of less help.
Also as domain is same, and If client(Project we are working for) is different , inspite of sharing old data with new client (new project), could i use old client trained model pickle and update it with training in new client data. Basically I am transferring learning
Great question.
This is a challenging problem to solve. Really, the solution must be specific to your project requirements.
A flexible approach may be to build-in capacity into your encodings to allow for new words in the future.
The simplest approach is to ignore new words.
These, and other strategies are testable. See how performance degrades under both schemes with out-of-band test data.
Gracias por compartir,
Existe alguna forma en la que pueda realizar predicciones con nuevos datos solo con el modelo guardado? llamando este modelo desde un archivo nuevo? lo he intentado con la instruccion final:
# load the model from disk
loaded_model = pickle.load(open(filename, ‘rb’))
result = loaded_model.score(X_test, Y_test)
print(result)
pero no lo he logrado
373/5000
Thanks for sharing,
Is there any way I can make predictions with new data only with the saved model? calling this model from a new file? I have tried with the final instruction:
# load the model from disk
loaded_model = pickle.load (open (filename, ‘rb’))
result = loaded_model.score (X_test, Y_test)
print (result)
but I have not achieved it
That is exactly what we do in this tutorial.
What is the problem exactly?
Hi Jason, I learn a lot reading your python books and blogs. Thank you for everything.
I’m having an issue when I work on text data with loaded model in a different session. I fit and transform training data with countvectorizer and tfidf. Then I only transform the test data with the fitted instances as usual. But, when work on loaded pretrained model in a different session, I am having problem in feature extraction. I can’t just transform the test data as it asks for fitted instance which is not present in the current session. If I fit and transform on test data only, model prediction performance drastically decreases. I believe that is wrong way of doing machine learning. So, how can I do the feature extraction using countvectorizer, tfidf or other cases while working with previously trained model?
I’m using spark ML but I think it would be the same for scikit-learn as well.
Perhaps you can pickle your data transform objects as well, and re-use them in the second session?
Hi Jason,
I trained a random forest model and saved the same as a pickle file in my local desktop. I then copied that pickle file to my remote and tested the model with the same file and it is giving incorrect predictions. I am using python 3.6 in my local and python 3.4 in my remote, however the version of scikit-learn are same. Any ideas why this may be happening?
No idea, perhaps see if the experiment can be replicated on the same machine? or different machines with the same version of Python?
Hi Jason Brownlee,
I have a LogisticRegression model for binary classification. I wish to find a similar data points in a trained model for a given test data points. So that I can show these are similar data points predicted with these same class.
Could you please suggest your thoughts for the same. I am using scikit learn logistic regression
Thanks
Perhaps you could find data points with a low Euclidean distance from each other?
Hi Jason –
If you pickle a model trained on a subset of features, is it possible to view these features after loading the pickled model in a different file? For example: original df has features a,b,c,d,e,f. You train the model on a,c,e. Is it possible to load the pickled model in a separate script and see the model was trained on a,c,e?
Thanks,
James
Yes, you can save your model, load your model, then use it to make predictions on new data.
Hi Jason,
Thanks for explaining it so nicely. I am new to this and will be needing your guidance. I have data using which I have trained the model. Now I want this model to predict an untested data set. However, my requirement is an output which will have the data and corresponding prediction by the model. For example, record 1 – type a, record 2 – type a, record 3 – type c and so on. Could you please guide me on this?
You can provide predictions one at a time or in a group to the model and the predictions will be in the same order as the inputs.
Does that help?
Hi Jason!
I am new in python and I have the same problem. I already have trained the model to predict sex, but I need to predict an untested dataset (input a .csv file with the same features).
Please, what command should I have to use?
My untested dataset has 14 features, does it makes a sense to do predictions one at a time? I tried the other tutorial (https://machinelearningmastery.com/how-to-connect-model-input-data-with-predictions-for-machine-learning/), but it still have problems:
in _validate_X_predict
X = check_array(X, dtype=DTYPE, accept_sparse=”csr”)
ValueError: at least one array or dtype is required
Sorry if it is a silly question (I’ve been looking for the sequence of commands to predict new data for hours). Thanks for your help!
See this:
https://machinelearningmastery.com/make-predictions-scikit-learn/
See this for making predictions:
https://machinelearningmastery.com/make-predictions-scikit-learn/
Hi,
I am using chunks functionality in the read csv method in pandas and trying to build the model iteratively and save it. But it always saves the model that is being built in the last chunk and not the entire model. Can you help me with it
clf_SGD = SGDClassifier(loss=’modified_huber’, penalty=’l2′, alpha=1e-3, max_iter=500, random_state=42)
pd.read_csv(“file_name”,chunksize = 1000):
“””
data preparation and cleaning
“””
hashing = hv.fit_transform(X_train[‘description’])
clf_SGD.partial_fit(hashing, y_train, classes= y_classes)
joblib.dump(clf_SGD, source_folder + os.path.sep+’text_clf_sgd.pkl’)
Sorry, I’m not sure I follow, could you please try reframing your question?
Hi Jason,
This is extremely helpful and saved me quite a bit of processing time.
I was training a Random Forest Classifier on a 250MB data which took 40 min to train everytime but results were accurate as required. The joblib method created a 4GB model file but the time was cut down to 7 Minutes to load. That was helpful but the results got inaccurate or atleast varied quite a bit from the original results. I use average of 2 Decision Tree and 1 Random Forest for the model. Decision Tree Models have kept there consistency loading vs training but RF hasn’t. Any ideas?
Thank you very useful!!
You’re welcome.
Hello, if i load model
loaded_model = joblib.load(filename)
result = loaded_model.score(X_test, Y_test)
print(result)
can i use this model for another testsets to prediction?
Sure.
Hi Jason,
How do I generated new X_Test for prediction ? This new X_Test needs to make sure that the passed parameters are same in the model was trained with.
Background: I am basically saving the model and predicting with new values from time to time. How do we check whether the new values have all the parameters and correct data type.
Visualization and statistics.
I have many posts on the topic, try the search box.
Jason. Very good article. As asked by others, in my case I am using DecisionTreeClassifier with text feature to int transformation. Eventhough, you mentioned that transformation map can also be picked and read back, is there any example available? Will it be stored in the same file or it will be another file?
In a separate file.
Thank you so much professor
we get more new knowledge
You’re welcome. Also, I’m not a professor.
HI sir,
I would like to save predicted output as a CSV file. After doing ML variable I would like to save “y_predicted”. And I’m using python ide 3.5.x I have pandas,sklearn,tensorflow libraries
You can save the numpy array as a csv.
https://docs.scipy.org/doc/numpy-1.13.0/reference/generated/numpy.savetxt.html
Hi Jason,
I would like to save predicted output as a CSV file. After doing ML variable I would like to save “y_predicted”. How I can save Naive Bayes, SVM, RF and DT Classification for final predictions for all samples saved as a .csv with three columns namely Sample, Actual value, Prediction
values
Perhaps create a dataframe with all the columns you require and save the dataframe directly via to_csv():
https://pandas.pydata.org/pandas-docs/stable/generated/pandas.DataFrame.to_csv.html
I have a list of regression coefficients from a paper. Is there a way to load these coefficients into the sklearn logistic regression function to try and reproduce their model?
Thanks!
Tommy
No model is needed, use each coefficient to weight the inputs on the data, the weighted sum is the prediction.
Hi,all
I am using scikit 0.19.1
I generated a training model using random forest and saved the model. These were done on ubuntu 16.01 x86_64.
I copied the model to a windows 10 64 bit machine and wanted to reuse the saved model. But unfortunately i get the following
Traceback (most recent call last):
File “C:\Users\PC\Documents\Vincent\nicholas\feverwizard.py.py”, line 19, in
rfmodel=joblib.load(modelfile)
File “C:\Python27\lib\site-packages\sklearn\externals\joblib\numpy_pickle.py”, line 578, in load
obj = _unpickle(fobj, filename, mmap_mode)
File “C:\Python27\lib\site-packages\sklearn\externals\joblib\numpy_pickle.py”, line 508, in _unpickle
obj = unpickler.load()
File “C:\Python27\lib\pickle.py”, line 864, in load
dispatchkey
File “C:\Python27\lib\pickle.py”, line 1139, in load_reduce
value = func(*args)
File “sklearn\tree_tree.pyx”, line 601, in sklearn.tree._tree.Tree.cinit
ValueError: Buffer dtype mismatch, expected ‘SIZE_t’ but got ‘long long’
What could be happening? Is it because of a switch from ubuntu to windows? However i am able to reuse the model in my ubuntu.
Perhaps the pickle file is not portable across platforms?
Can we load model trained on 64 bit system on 32 bit operating system..?
I’m skeptical that it would work. Try it and see. Let me know how you go.
Dear Jason :
Thank you for ‘le cours’ which is very comprehensive.
I have a maybe tricky but ‘could be very usefull’ question about my newly created standard Python object.
Is it possible to integrate a call to my Python object in a Fortran program ?
Basically I have a deterministic model in which I would like to make recursive calls to my Python object at every time step.
Do I need some specific libraries ?
Thank you
Best regards
You’re welcome.
I suspect it is possible. It’s all just code at the end of the day. You might need some kind of Python-FORTRAN bridge software. I have not done this, sorry.
Hi Sir ,
I wanted to know if its possible to combine the scikit preloaded datasets with some new datasets to get more training data to get further higher accuracy or firstly run on the scikit loaded dataset and then save model using pickle an run it on another dataset .
Which method will be correct ?
Please help .
Sure, you can, but it may only make sense if the data was collected in the same way from the same domain.
How it can be done? When I am loading the pickle and try to fit new data , the model gets fitted with new data only.
If the model has already been fit, saved, loaded and is then trained on new data, then it is being updated, not trained from scratch.
Perhaps I don’t understand the problem you’re having?
Hii Jason,
Can you put example of how to store and load Pipeline models?
eg.
clf = Pipeline([(“rbm”,rbm),(“logistic”,logistic)])
clf.fit(trainX,trainY)
Perhaps use pickle? This might help:
https://machinelearningmastery.com/save-load-machine-learning-models-python-scikit-learn/
Hi jason,
My name is Akash Joshi.I am trying to train my scikit svm model with 101000 images but I run out of memory.Is there a way where I can train the svm model in small batches?Can we use pickle?
Perhaps try running on a machine with more RAM, such as an EC2 instance?
Perhaps try using a sample of your dataset instead?
Perhaps use a generator to progressively load the data?
Hi Jason
I want to know how can presist a minmax transjformation? There are ways to persist the final model but to persist the transformations?
Thanks
Save the min and max values for each variable.
Or save the whole object.
thank you the post, it is very informative but i have a doubt about the labels or names of the dataset can specify each.
What do you mean exactly?
names = [‘preg’, ‘plas’, ‘pres’, ‘skin’, ‘test’, ‘mass’, ‘pedi’, ‘age’, ‘class’]
in the above code what are these “preg” , “plas”, “pres” etc…
You can learn about these features here:
https://github.com/jbrownlee/Datasets/blob/master/pima-indians-diabetes.names
thank you sir…
HI Jason!
I created a machine learning (GBM) model to predict house prices and a Django application to usability. This model has more than 1000 n_estimators and it takes more than 1 minutes to load before getting the prediction in every request.
I would like to load joblib dump file just once and store the model in memory, avoiding loading the model in every get requests.
What is your best practice for this?
Thanks
This sounds like a web application software engineering question rather than a machine learning question.
Perhaps you can host the model behind a web service?
thank you, meanwhile I found some caches -related solution in Django documentation, this perhaps solve the loading problem
Glad to hear it.
okay what if i had 2 datasets for Example a Loan datasets
the first dataset has a Loan_Status attribute
and the second one does not have a Loan_Status attribute
if i trained the model on the first dataset and i want to predict the Loan_Status for the second dataset, how to do that? please make it simple for me i’m beginner
This process wills how you how to work through a predictive model systematically:
https://machinelearningmastery.com/start-here/#process
Hey Jason, I am working on a model to classify text files. I am using the CountVectorizer, TfidfTransformer and SGDClassifier in the same sequence on a set of data files. I am saving the SGDClassifier object via the joblib.dump method you have mentioned in this article.
Do I also need to save the vectorizer and transformer objects/models ? Since when i take a new file for classification I will need to go through these steps again.
Yes, they are needed to prepare any data prior to using the model.
Just what I needed today. Thank syou.
I’m happy to hear that Dennis.
Hi Jason,
Appreciate for the article. when i am saving the model and loading it in different page.Then it is showing different accuracy.
Problem trying to solve: I am using oneclasssvm model and detecting outliers in sentences.
I have not seen that, are you sure you are evaluating the model on exactly the same data?
Yes Jason i am using gensim word2vec to convert text into feature vectors and then performing classification task.after saving model and reloading in another session its giving different results.
That is odd. I have not seen this.
Perhaps report a fault/bug?
Hi Jason,
I am training a neural network using MLPRegressor, trying to predict pressure drop in different geometries of heat exchangers. I think I have gotten the network to train well with low MRE, but I can’t figure out how to use the network. When I tried to load using pickle and call again, I am getting an error when using “score”. I am new to python so not sure how to go about bringing in new data for the network to predict or how to generalize doing so.
I don’t recommend using pickle. I recommend using the Keras API to save/load your model.
Once you find a config that works for your problem, perhaps switch from the sklearn wrappers to the Keras API directly.
Hi Jason,
Thanks for the recommendation. Is there no easy way to save a model and call from it to use in scikit learn? I have been getting good results with the model I have made on there, I just don’t know how to get it to the point where I can actually use the network (i.e. put in a geometry and get it’s predictions).
If using Keras API to save/load is the best option, how do I go about doing that?
There may be, but I don’t have an example, sorry.
Hello Jason,
Thank you for your nice tutorial! Does pickle.dump(model, open(filename, ‘wb’)) only save the neural network model or it also save the parameters and weights of the model?
Does the back propagation and training is done again when we use pickle.load ?
What I would like to do is that I aim to save the whole model and weights and parameters during training and use the same trained model for every testing data I have. I would be so thankful if you could assist me in this way.
I believe you cannot use pickle for neural network models – e.g. Keras models.
Hi Jason,
I am trying to save my model using joblib.dump(model, ‘model.pkl’) and load it back up in another .py file model = joblib.load(‘model.pkl’) but then the accuracy dropped and each time I run it the accuracy differs a lot. I coefficient and the intercept and the same for both models. Any ideas why this might happen. Thanks in advance.
Perhaps this will help:
https://machinelearningmastery.com/faq/single-faq/why-do-i-get-different-results-each-time-i-run-the-code
Hey man I am facing a trouble with pickle, when I try to load my .pkl model I am getting following error :
UnicodeDecodeError: ‘ascii’ codec can’t decode byte 0xbe in position 3: ordinal not in range(128)
Can you please tell me something since I have tried all fixes I could find..
Perhaps post your error on stackoverflow?
I want to develop to train my model and save in pickle file. From the next time onwards, when i want to train the model, it should save in previously created pickle file in append mode that reduces the time of training the model. I am using LogisticRegression model.
Any helps would be greatly appreciated.
This post shows how:
https://machinelearningmastery.com/save-load-machine-learning-models-python-scikit-learn/
This article shows how to save a model that is built from scratch. But I am looking to train the model by including additional data so as to achieve high prediction performance and accuracy for unseen data. Is there any leads or approach you can think?
I don’t understand, sorry. Training a model and saving it are separate tasks.
Hi Jason,
I have some requirement to integrate python code with Java.
I have a ML model which is trained as saved as pickle file, Randomforestclassifier.pkl. I want to load this one time using java and then execute my “prediction” part code which is written python. So my workflow is like:
1. Read Randomforestclassifier.pkl file (one time)
2. Send this model as input to function defined in “python_file.py” which is executed from java for each request
3. python_file.py has prediction code and predictions returned should be captured by java code
Please provide suggestions for this workflow requirement I have used processbuilder in java to execute python_file.py and everything works fine except for model loading as one time activity.
Can you help me with some client server python programming without using rest APIs for one time model loading?
I recommend treating it like any other engineering project, gather requirements, review options, minimize risk.
Hi Jason,My3,
I have a similar requirement to integrate java with python as my model is in python and in my project we are using java.
Could you please help here.
Thanks for the suggestion.
Hi Jason,
I have trained my model and evaluated the accuracy using cross-validation score.
After evaluating the model, should I train my model with the whole data set and then save the new trained model for new future data. (assuming the new model performs with good accuracy around mean accuracy from cross-validation)
Thank you for your tutorials and instant replies to questions. 🙂
Yes, see this post:
https://machinelearningmastery.com/train-final-machine-learning-model/
Jason, thanks so much for value add.
You’re welcome.
That helped me a lot. Thank you
I’m happy to hear that.
How would you go about saving and loading a scikit-learn pipeline that uses a custom function created using FunctionTransformer?
Perhaps pickle?
Hey Jason,
I have a very basic question, let’s say I have one model trained on 2017-2018, and then after 6 months I feel to retrain it on new data. What does retraining actually means here, do I need to have target for my new data and needs to trained from scratch for new time period, I obviously don’t have the target and then how model will learn from new data.
You have many options, e.g. develop a new model, update the old model, some mixture of the two with an ensemble.
Hi Jason,
I am new to this.. So pardon, if I am asking something incorrect…
I have two stages. Build model and predict.
For Build model:
I am using vectorizer.fit_transform(data) and building the logistic model. My data is a bunch of comments and the target is a set of categories. In order for me to use that model for predicting categories for new comments, I am using the vector created earlier during building of model to predict
So, when I do the save model joblib.dump(log_model, “model.sav”)
Foe Predict:
When I try to re-run the model (saved) at a later point of time, I don’t have the original vectorizer anymore with the original data set
log_model = joblib.load(“model.sav”)
inputfeatures_nd = vectorizer.transform(newComment);
pred = log_model.predict(inputfeatures_nd)
I get this error – sklearn.exceptions.NotFittedError: CountVectorizer – Vocabulary wasn’t fitted.
What do you suggest I should do ? Should I be serializing the vector also and storing ?
You must use the same vectorizer that was used when training the model. Save it along with your model.
Thanks Jason! Yes it worked after I save and reload.
I’m happy to hear that.
Thanks Jason for your intersting subjects.
I have this error when saving a VGG16 model after training and testing on my own dataset (can’t pickle _thread.RLock objects) when applying the two methods. I also read somewhere that Keras models are not Pickable. So, do you think that those methods are applicable in my case?
Yes, don’t use pickle for Keras models.
Use the Keras save API:
https://machinelearningmastery.com/save-load-keras-deep-learning-models/
Awesome post! Keep doing the good work bro!
Thanks.
Hi Jason, your promised “free” book never came, it looks you are collecting emails for promotions 🙂
Sorry to hear that, I can confirm that your email is not in the system, perhaps a typo when you entered it?
Nevertheless, email me directly and I will send you whichever free ebook you are referring to:
https://machinelearningmastery.com/contact/
Hi Jason, I have a .sav file where my random forest model has been trained. I have to get back the whole python script for training the model from that .sav file. Is it possible??
You can load the saved model and start using it.
Hi Jason, I have trained a model of Naved Baise for sentiment analysis through a trained dataset file of .csv and now I want to use that model for check sentiments of the sentences which are also saved in another .csv file, how could I use?
Save the model, then load it in a new example and make predictions.
Hi Jason,
I have a Class Layer defined to do some functions in Keras. I trained the model and pickled it. Now when I try to unpickle it, I see an error saying- unknown layer Layer.
How should be pickle the model in this case?
I don’t recommend using pickle for Keras models, instead Keras has it’s own save model functions:
https://machinelearningmastery.com/save-load-keras-deep-learning-models/
Can i use my previously saved model for prediction ?
Yes, load it and call model.predict().
See this post:
https://machinelearningmastery.com/how-to-make-classification-and-regression-predictions-for-deep-learning-models-in-keras/
When in this article you say:
“You might manually output the parameters of your learned model so that you can use them directly in scikit-learn”,
I see that we can manually get the tuned hyperparameters, or for example in svm, we can get weight coefficients (coef_),
BUT, is it possible to get svm hyperplane parameters, w and b (y=wx+b) for future predictions?
I believe that pickle saves and load the learned model including w and b but is there any way we can manually output w and b and see what they are in scikit learn?
Many thanks
I believe they will be accessible as attributes within the SVM class.
You might need to take a closer look at the API or even the source code to dig out the coefficients and how they are specifically used by sklearn to make a prediction.
Thank god for open source though, it’s all there for us!
Hi, thanks for this helpful article. I’m a beginner and I need to do documents classification. In my model I use :
training_pipeline_data = [
(‘vectorizer’, _create_vectorizer(lang)),
(‘densifier’, _create_densifier()),
(‘scaler’, _create_scaler()),
(‘classifier’, _create_classifier())
]
training_pipeline = ibpip.Pipeline(training_pipeline_data)
training_pipeline.fit(features, labels)
with
def _create_vectorizer(language):
stop_words = safe_get_stop_words(language) if language != ‘en’ else ‘english’
return TfidfVectorizer(sublinear_tf=True, min_df=7, norm=’l2′, ngram_range=(1, 2),
encoding=’latin-1′, max_features=500, analyzer=’word’,
stop_words=stop_words)
def _create_densifier():
return FunctionTransformer(lambda x: x.todense(), accept_sparse=True, validate=False)
def _create_scaler():
return StandardScaler()
def _create_classifier():
return GradientBoostingClassifier(n_estimators=160, max_depth=8, random_state=0)
Do I have to save in the pickel file the whole pipeline or just the classifier ?
When I save the whole pipeline, the size of the pickel file increases with the amount of training data, but I thouht it shouldn’t impact the model size (only the parameters of the model should impact the size of this one)
Pickle all of it.
Yes, you are saving the mapping of words to numbers, it includes the whole known vocab required to encode new samples in the future.
Hi Jason,
How can I load the model to predict further?
I show how to load the model in the above tutorial.
What problem are you having exactly?
Hi, big fan of your tutorials.
What are you thought about ONNX (https://onnx.ai/)
Do you think about making a tutorial to explain how it works and how to use it ?
What is ONNX? Perhaps you can summarize it for me?
Hi, thanks for the very useful post, as always!
I wanted to ask you, does this procedure work for saving Grid – Searched models as well? Because when I try to save the grid-search.best_estimator_ it does not give me the results I expect it to (ie the same score on the sample data I use) and the solutions I have found don’t work either. Any tips on how to do that?
Many thanks!
Typically we discard grid search models as we are only interested the configuration so we can fit a new final model.
Could you please point me to a source which shows how this is done in code? I ‘ve tried (via my search) the following and it does not give me the expected results:
grid_elastic = GridSearchCV(elastic, param_grid_elastic,
cv=tscv.split(X),scoring=’neg_mean_absolute_error’, verbose=1)
grid_elastic.fit(X,y)
print(grid_elastic.score(X,y))
filename = ‘finalized_model_grid.sav’
joblib.dump(grid_elastic.best_params_, filename,compress=1)
loaded_params_grid = joblib.load(filename)
elastic = ElNet().set_params(**loaded_params_grid)
elastic.fit(X,y)
result = elastic.score(X, y)
print(result)
I grid search an example model, fit it, calculate an example metric for comparisons, and then attempt to save the parameters and use them to instantiate the best estimator later, to avoid having to redo the exhaustive search. It does not give me the same score though. What is wrong? I ‘ve tried just saving the best_estimator_ but it gives me the same wrong result.
Great question, and this is very common.
Machine learning algorithms are stochastic and we must average their performance over multiple runs.
You can learn more here:
https://machinelearningmastery.com/faq/single-faq/why-do-i-get-different-results-each-time-i-run-the-code
firstly, thank you for sharing such amazing information always.
this is my code:
import time
import numpy as np
import pandas as pd
from nltk import word_tokenize
from nltk import pos_tag
from nltk.corpus import stopwords
from nltk.stem import WordNetLemmatizer
from sklearn.preprocessing import LabelEncoder
from collections import defaultdict
from nltk.corpus import wordnet as wn
from sklearn.feature_extraction.text import TfidfVectorizer
from sklearn import model_selection, svm
from sklearn.metrics import accuracy_score
from sklearn.ensemble import RandomForestClassifier
import pickle
start_time = time.time()
np.random.seed(500)
#getting only the required columns and rows
dataset = pd.read_csv(“records.csv”, sep=”\t”)
dataset_new = dataset.iloc[:, [4, 5, 6, 8, 9]]
df = dataset_new.dropna(subset=[‘Debit’])
df_required = df.iloc[:, [0, 2]]
df_required = df_required[df_required[‘Description’] != ‘OPENING BALANCE’]
df_less = df_required.iloc[:,:]
df_less = df_less.reset_index(drop=True)
# dataset cleanup
df_less = df_less.dropna(subset=[‘Description’])
df_less = df_less.dropna(subset=[‘First Level Category’])
df_less[‘description’] = ” ”
for index, row in df_less.iterrows():
row[‘description’] = row[‘Description’].replace(“-“, ” “)
row[‘description’] = row[‘description’].replace(“/”, ” “)
row[‘description’] = row[‘description’].replace(“_”, ” “)
row[‘description’] = row[‘description’].replace(“:”, ” “)
row[‘description’] = row[‘description’].replace(“.”, ” “)
dataset_time = time.time()
print (“Time taken to create dataset : “, dataset_time – start_time)
df_less[‘description’] = [entry.lower() for entry in df_less[‘description’]]
df_less[‘description’] = [word_tokenize(entry) for entry in df_less[‘description’]]
df_less = df_less.reset_index(drop=True)
tokenize_time = time.time()
print (“Time taken to tokenize dataset : “, tokenize_time – dataset_time)
for index, entry in enumerate(df_less[‘description’]):
Final_words = []
for word in entry:
if word.isalpha():
Final_words.append(word)
df_less.loc[index, ‘desc_final’] = str(Final_words)
df_others = df_less[df_less[‘desc_final’] == ‘[]’]
df_less_final = pd.DataFrame()
df_less_final = df_less[df_less[‘desc_final’] != ‘[]’]
df_less_final = df_less_final.reset_index(drop=True)
data_cleanup_time = time.time()
print (“Time taken for data cleanup”, data_cleanup_time – tokenize_time)
Train_X, Test_X, Train_Y, Test_Y = model_selection.train_test_split(df_less_final[‘desc_final’],
df_less_final[‘First Level Category’], test_size=0.33,
random_state=10,shuffle=True)
Tfidf_vect = TfidfVectorizer(max_features=106481)
Tfidf_vect.fit(df_less[‘desc_final’])
Train_X_Tfidf = Tfidf_vect.transform(Train_X)
Test_X_Tfidf = Tfidf_vect.transform(Test_X)
clf = RandomForestClassifier(n_jobs=8, random_state=10)
clf.fit(Train_X_Tfidf, Train_Y)
RandomForestClassifier(bootstrap=True, class_weight=None, criterion=’gini’,
max_depth=None, max_features=’auto’, max_leaf_nodes=None,
min_impurity_split=1e-07, min_samples_leaf=20,
min_samples_split=2, min_weight_fraction_leaf=0.0,
n_estimators=100, n_jobs=8, oob_score=False, random_state=10,
verbose=0, warm_start=False)
preds = clf.predict(Test_X_Tfidf)
print(“Random forest Accuracy Score -> “, accuracy_score(preds, Test_Y) * 100)
preds.tofile(“foo.csv”, sep = ‘\n’)
dff = pd.DataFrame()
col_name = [‘category’]
dff = pd.read_csv(“foo.csv”, names = col_name, sep=”\n”)
sir this a model that i have prepared now i want to dump it using pickle but i am not able to understand how can i do this…since everytime i want to predict new records i want to preprocess my one of my rows as i am doing above, and also used vectorizer..and then predict the results..can you please help me with the solution.
thank you
This is a common question that I answer here:
https://machinelearningmastery.com/faq/single-faq/can-you-read-review-or-debug-my-code
hi how can i learn python fast for the purpose of deep learning models like lstm ?
can you notify me on gmail please
Right here:
http://machinelearningmastery.com/crash-course-python-machine-learning-developers/
Thank you so much for all your effort, but I am a beginner in ML and Python and I have a basic conceptual question:
I used a CSV file to train, test and fit my random forest model then I saved the model in a pickle file. Now my partner wants to use the model for prediction on new unseen data(entered by user) so my question is should I send her only the model I saved in a pickle file or also the data I used to train and fit the model? I mean would the pkl model work even if the CSV file containing the data used to fit the model is not in the same folder or host? I hope my question is clear. Thank you again very much!!
Just the model is required.
Sir, model saving and re-using is okay but what about the pre-processing steps that someone would have used like LabelEncoder or StandardScalar function to transform the features.
We would need to apply the same transformation on the unseen dataset so how do we proceed there? How can we save these pre-processing steps.
Yes, pre-processing must be identical. You might want to save the objects involved.
I have trained the model using python 3.7, will i be able to test it using python 3.5?
Not sure, perhaps test it and see?
Hi Jason,
I’m a big fan of your blog. The thing is, while it is useful to save a model, often the model is already part of a pipeline. I’ve had success using the joblib method to store a pre-trained pipeline and then load it into the same environment that I’ve built it in and get predictions. However, when I say, save a pipeline in AWS and then load it locally, I get errors.
Is there a best practice when it comes to saving pipelines vs naked models?
Perhaps a tutorial where you train a pipeline using RandomizedSearchCV and then save it would be useful?
Thanks for all your great tutorials!
What errors do you get?
Saving/loading a pipeline is the same as saving/loading a single model as far as I understand.
Hi Jason, thanks for your time, and really interesting tutorials !
I trained and saved a random forest model, and i analysed the classification performance with different thresholds.
Now i want to apply this saved random forest with a new data set, to get predictions, but using a different threshold than 50%. But it seems i can’t get the outcome of rf.predict_proba(x) function, i get a “NotFittedError”… it says that my rf model is not fitted yet… i am lost now… Is there sthg wrong in my reasoning ? Is there an other way to get the classification probabilities ?Thank you.
Perhaps confirm the model was fit, and the fit model was saved?
Hi Jason..there is a error in line number 13 of the code…instead of “# Fit the model on 33%” it should be “# Fit the model on 67%” as we are fitting the model to the training set which is 67%…
Thanks, fixed.
Hi Jason,
I am working on APS failure scania trucks project…
After using joblib library for saving & loading the file, i got the following:
# Save model for later use
modelName = ‘finalModel_BinaryClass.sav’
joblib.dump(finalModel, modelName)
Output: [‘finalModel_BinaryClass.sav’]
# load the model from disk
loaded_model = joblib.load(modelName)
result = loaded_model.score(X_validation, Y_validation)
print(result)
Output: 0.9894375
My query is i am unable to find where the final model is saved… Could you please help me?
It will be in your current working directly, e.g. where you are running the code.
Thanks a lot Mr. Jason
You’re welcome.
Hi Sir,
Excellent tutorial.
Could you please tell me, why you used .sav format to save the model?
Can we use .pkl format instead. What is the advantage of .sav over .pkl or any other format.
Thank you,
KK
We use the pickle format in this tutorial. You can use any file extension you wish.
if you build a model using class weights, do you need to account for that in any way when scoring a new dataset?
No, but you should select a metric that best captures what is important about the predictions.
E.g. use F-measure or G-mean, or precision, ROC AUC, etc.
Hi,
I have also used Standardization on the training and testing dataset. I have deployed the model file.
How can I do standardization when calling the model through API?
This will help:
https://machinelearningmastery.com/how-to-save-and-load-models-and-data-preparation-in-scikit-learn-for-later-use/
Hi Jason,
Can you please tell me how to convert a .pkl file to .pb file or .tflite file?
I don’t know off hand, perhaps try posting to stackoverflow?
SHubham, were you able to find a solution to this?
Hi Jason !
My model was created with exel file..Anyway model is ready. Now I would like to use model online. I mean ınputs are will come from sql database and same time I would like to see result from model. (Predıct value)
Can you explain me please how to do ?
Yes, implement your model in code, then pass one row at a time to your model to make predictions.
Ok but how ? I am asking because I am not sure how to do?
If you can explain me a little bit, or you can Show me example (example link) I would be happy.!
Thanks so much.
I don’t know how to answer you – the question is two broad. You have complete freedom over how you code your own algorithm and save it.
Perhaps you can narrow down your question. Also, I don’t have the capacity to implement your algorithm for you.
If you prefer to use a library, the example in the above tutorial would be a good start.
Can these model files pickles be opened or created in anything else?
I know orange uses some of scikit learn and ran both.
But I never made a scikit learn pickle and opened it in orange or created a orange save model wiget file is a pickle file.
I would like to use this to open a model in keras tensorflow and be able to run the apps to make it tensorflow light compatible and then run it in a microcontroller. Like rasbery pi 4 or maby the requirements is it has to run python 3 there are some arm processors that do that.
Perhaps.
You cannot pickle a keras model, you must use the h5 format:
https://machinelearningmastery.com/save-load-keras-deep-learning-models/
Hi Jason, I was working through this from your ML Master w/ Python Book and ran into this error:
Traceback (most recent call last):
File “/Users/pierrenoujeim/Desktop/MLDS/Python/MasterML/ml w: python/code/17. Save and Load Models/pickletest.py”, line 2, in
import pandas
File “/anaconda3/lib/python3.6/site-packages/pandas/__init__.py”, line 19, in
“Missing required dependencies {0}”.format(missing_dependencies))
ImportError: Missing required dependencies [‘numpy’]
I copied the code as is from this page and got the same error. What should I do?
Ouch. I have not seen that before.
Perhaps confirm that Python and scipy are installed correctly:
https://machinelearningmastery.com/setup-python-environment-machine-learning-deep-learning-anaconda/
And if so, perhaps search or post the error to stackoverflow.
Jason one question… how we can export the results of our model to Excel or ASCII file?
thanks
See this tutorial:
https://machinelearningmastery.com/how-to-save-a-numpy-array-to-file-for-machine-learning/
Hi Jason,
How can i unpickle the learnable parameters(weights and biases) after Fitting the model. I am finding hard to get the learnable parameters from the pickle file. Is there any process??
Thanks
Each model stores its internal parameters differently.
The sckit-learn API explains how to access the parameters of each model, once loaded.
how can I store the output of one class svm to buffer in python?
See this:
https://machinelearningmastery.com/how-to-save-a-numpy-array-to-file-for-machine-learning/
Hi Jason!
Thank you for this tutorial! You always explain concepts so easy!
I have a question.
If I had to use a scaler during training like
…
X_scaled = scaler.fit_transform(X)
…
Later I fitted the model and saved it with pickle.dump(clf, open(filename, ‘wb’))
Then I supone that I have to scale test data for prediction using the same scaler fitted during training like scaler.transform(x_test)
My question is: besides saving the model, do we have to save objects like the scaler in this example to provide consistency? Can we use pickle or joblib ?
Thank you
Thanks.
Yes, save the model and any data prep objects, here is an example:
https://machinelearningmastery.com/how-to-save-and-load-models-and-data-preparation-in-scikit-learn-for-later-use/
Thank you! You rock !
Thanks!
Hi Jason,
Thank you for all the pieces you put here. I always find your resources very useful.
Many thanks.
Thanks!
Hi Jason,
I am using Django to deploy my model to the web….. I am getting a strange behaviour with the labelencoder of my model…..Can you please help me to go through this by posting an article:
How to deploy a sklearn model in django..
please
Best Regards,
Adarsh
No idea, sorry. Perhaps try posting on stackoverflow.
Thank you. This post shows how to save a model once after being trained on the entire dataset in one go. However, most of the real-world data sets are huge and can’t be trained in one go. How can I save a model after training it on each chunk of data?
df = pd.read_csv(“an.csv”, chunksize=6953)
for chunk in df:
text = chunk[‘body’]
label = chunk[‘user_id’]
X_train, X_test, y_train, y_test = train_test_split(text, label, test_size=0.3 )
text_clf = Pipeline([(‘vect’, TfidfVectorizer()),
(‘tfidf’, TfidfTransformer()),
(‘clf’, LinearSVC()),
])
text_clf.fit(X_train, y_train)
# save the model to disk
filename = ‘finalized_model.sav’
joblib.dump(model, filename)
Saving it this way will give me the model trained on the last chunk. I want the model trained on every chunk. Any help?
Really, I don’t agree.
If you can’t fit your data in memory, perhaps look into using a framework like hadoop with mahout to fit models using online methods?
So are you saying saving that way will give me a model based on every chunk?
No, there are algorithms and versions of algorithms that support iterative learning algorithms – called online learning.
Hi Jason,
i forgot parameter of saved model. How can i get parameter of model from .sav file?
Most sklearn models store the parameters used to configure their instance as a property (I think…). Check the contents of the loaded object, or check the sklearn api.
Hi,
is possible to convert a sklearn model in tensorflowlite model (.tflite)?
i need to run an SVM model in android and this seems to me the best solution (if it is possible)
are there other solution?
I don’t know, sorry.
Great post, thank you!
I tried this out but noticed that every time I serialize a model, the resulting file has a different checksum. Any ideas how to preserve the integrity of the model file if data and algorithms do not change?
Here is my test code:
import numpy as np
from sklearn import linear_model
import joblib
import hashlib
# set a fixed seed …
np.random.seed(1979)
# internal md5sum function
def md5(fname):
hash_md5 = hashlib.md5()
with open(fname, “rb”) as f:
for chunk in iter(lambda: f.read(4096), b””):
hash_md5.update(chunk)
return hash_md5.hexdigest()
# dummy regression data
X = [[0., 0., 0.,1.], [1.,0.,0.,0.], [2.,2.,0.,1.], [2.,5.,1.,0.]]
Y = [[0.1, -0.2], [0.9, 1.1], [6.2, 5.9], [11.9, 12.3]]
# create model
reg = linear_model.LinearRegression()
# save model to disk to make it persistent
with open(“reg.joblib”, “w”):
joblib.dump(reg, “reg.joblib”)
# load persistant model from disk
with open(“reg.joblib”, “r”):
model = joblib.load(“reg.joblib”)
# fit & predict
reg.fit(X,Y)
model.fit(X,Y)
myprediction1 = reg.predict([[2., 2., 0.1, 1.1]])
myprediction2 = model.predict([[2., 2., 0.1, 1.1]])
# run several times … why does md5sum change everytime?
print(md5(“reg.joblib”))
print(myprediction1, myprediction2)
Thanks!
The model will be different each time you train it, in turn different weights are saved to file.
Just to properly close this example and after some more investigation I can say the problem in my example stems from the joblib.dump serialization. The simple linear regression model with its weights is reproducible. For anybody interested, I tried to answer it here giving more context: https://stackoverflow.com/questions/61877496/how-to-ensure-persistent-sklearn-models-on-bit-level
Thanks for sharing!
xgb_clf =xgb.XGBClassifier(base_score=0.5, booster=’gbtree’, colsample_bylevel=1,
colsample_bynode=1, colsample_bytree=0.7, gamma=0.0, gpu_id=-1,
importance_type=’gain’, interaction_constraints=”,
learning_rate=0.1, max_delta_step=0, max_depth=10,
min_child_weight=3, monotone_constraints='()’,
n_estimators=100, n_jobs=0, num_parallel_tree=1,
objective=’binary:logistic’, random_state=50, reg_alpha=1.2,
reg_lambda=1.6, scale_pos_weight=1.0, subsample=0.9,
tree_method=’exact’, validate_parameters=1, verbosity=None)
xgb_clf.fit(X1, y1)
#predict train set
print(‘train set’)
y2_pred = xgb_clf.predict(X1)
# print the accuracy
print(‘ xtra Gradient boosting Classifier model accuracy score for train set : {0:0.4f}’. format(accuracy_score(y1, y2_pred)))
I have designed model using XGBoostingClassifier()
then,
#pip install pickle-mixin
import pickle
# saving the model to the local file system
filename = ‘finalized_model.pickle’
pickle.dump(xgb_clf, open(filename, ‘wb’))
when , I m passing train data set to check my pickled model is working or not ?
# prediction using the saved model.
loaded_model = pickle.load(open(filename, ‘rb’))
prediction=loaded_model.predict(X1) #X1 is train at set
print(prediction)
O/P:-[0 0 0 … 1 1 1]
its giving fine as output
but when , I m giving single list of input then its giving error like
# prediction using the saved model.
loaded_model = pickle.load(open(filename, ‘rb’))
prediction=loaded_model.predict([[62.0,9.0,16.0,39.0,35.0,205.0]])
print(prediction)
TypeError: Input data can not be a list.
when I m removing [] bracket then its again giving like
# prediction using the saved model.
loaded_model = pickle.load(open(filename, ‘rb’))
prediction=loaded_model.predict([62.0,9.0,16.0,39.0,35.0,205.0])
print(prediction)
TypeError: Input data can not be a list.
when I m removing both [[]] from input
# prediction using the saved model.
loaded_model = pickle.load(open(filename, ‘rb’))
prediction=loaded_model.predict(62.0,9.0,16.0,39.0,35.0,205.0)
print(prediction)
TypeError: predict() takes from 2 to 6 positional arguments but 7 were given
plzzz , help in this problem
Sorry to hear that you are having trouble, perhaps this will help:
https://machinelearningmastery.com/faq/single-faq/can-you-read-review-or-debug-my-code
Jason
excellent article and way to explain. The examples worked correctly
Thanks!
Could I plot training vs testing accuarcy from this loaded model
You can calculate it and print it, but how would you plot it? A bar chart? It does not seem like enough information to plot.
Hello,
Can I use job lib to save and load LSI model ? or I should use another module ?
Thanks
What is an LSI model?
hello, thank you for this demonstration
how to predict on the unseen data
Call the predict() function, here are examples:
https://machinelearningmastery.com/make-predictions-scikit-learn/
Hi. Thanks for the amazing tutorial. It worked as told here.
I have a query.
After I have output a model using pickle, is it possible to open the model in R?
To put it in a simpler way, Is pickle output which according to the tutorial is a binary output, be read by R?
I don’t know if pickled Python models can be used in R. There may be code in R for doing this, try a google search.
I know you’re not a fan of windows but Im’ stick with it. Just to say skikit-learn is not available on windows but you already tutored a fine example of coding and comparing different algorithms, so I can live without it.
Can you save more than one model in the serialized dump file?
Perhaps.
You might want to check the documentation for pickle.
Thanks a lot
You’re welcome.
I cannot open the saved .npy file. As I click on the file to open it, I get the following text:
Error! C:\Users\hesab\Desktop\Hadis\PdSM.h5 is not UTF-8 encoded
Saving disabled.
See Console for more details.
Please help..How can I access the weights and biases which are saved in this file?
Sounds like a problem with your computer.
Perhaps talk to your admin or check the help for your operating system.
Thanks for your response.
Even I change my laptop, this problem does not solve. I cannot access weights and biases.
I was wondering if there is another way to solve it. 🙁
How to get value of accurancy from saved model ?
Load the model, make predictions on a hold out test set, compare predictions to expected values.
if the saved_model is in the form frozen_inference_graph.pb or graph.pbtxt, can we get the accuracy value? how is the coding? Please help me. thank you
Sorry, I don’t undertand your question.
Hi Jason, thanks for your article. Short question though – you mentioned:
“Manual Serialization. You might like to manually output the parameters of your learned model so that you can use them directly in scikit-learn or another platform in the future.”
Can you give me a head-start of how to load a model if I only have the intercept and slopes? should be possible, no? it is a multiple features linear regression model.
thanks.
Yes, you can load the coefficients and implement a function that uses them to make a prediction yourself.
OK, so it is not just use the sklearn.linear_model -> LogisticRegression object and assign to it the values? (I tried that and didn’t work for me…)
You can try that approach if you like, but it would be easier to save the whole sklearn object directly:
https://machinelearningmastery.com/save-load-machine-learning-models-python-scikit-learn/
Thanks for this great tutorial, I have a separate test dataset in a csv file.
May I know how to proceed to predict it on the training model alfter loading the model as explaining in your tutorial?
Should I split the test.csv file in X_train, X_test, y_train and y_test again?
This will help you load a dataset:
https://machinelearningmastery.com/load-machine-learning-data-python/
This will help you make predictions:
https://machinelearningmastery.com/make-predictions-scikit-learn/
Thanks for this interesting tutorial.
when I want to save my model by this code:
# save the model to disk
filename = ‘finalized_model.sav’
pickle.dump(model, open(filename, ‘wb’))
I receive this error:
“TypeError: cannot pickle ‘_thread.RLock’ object”
it means I use pickle to pickle the object but again I receive an error for it.
can you please say me what is the reason?
You’re welcome.
Sorry, I have not seen that error. Perhaps try posting your code and error to stackoverflow.com
Hi Jason, I’m currently doing my project on Machine Learning and currently have a lot of datasets (CSV files) with me. If I train one machine learning model with one dataset and save it either using pickle or joblib, do I need to do it for the rest of the dataset? (So I will have more saved model) or I could just load the saved model onto another dataset and let the program handle the prediction?
I hope my question is clear and thank you for your help.
p.s. Your website is really helpful for both beginners and experts in ML.
You only need to save the model, not the dataset. You might need to save the data prep objects too, or just use a pipeline and save it instead.
Hello Jason, Great post.
I am training a XGBoost model but when I save it and when I applied the model to the same data after loading it, the results are very different (like almost oposite to what we obtain when we predict the data with the model before saving it). Is the same exact data.
For example, the confusion matrix with the model before saving it can be something like:
0/1
0 80/20
1 20/80
And the confusion matrix with the same data but the loaded model is:
0/1
0 20/80
1 20/80
I saved the model with the different ways you teah in this post, and the situation persists. What can be the problem?
Thanks.